🖥️ Software

ARBO: Arbovirus modeling and uncertainty quantification toolbox A package designed for the modeling, simulation, and uncertainty quantification of arbovirus epidemics, such as Dengue, Zika, and Chikungunya. It provides tools for parameter estimation, sensitivity analysis, and forecasting. 🌐 URL 💻 GitHub ⬇️ Download

CE-ABC: Cross-Entropy Approximate Bayesian Computation This MATLAB package integrates the Cross-Entropy method with Approximate Bayesian Computation for uncertainty quantification in mechanistic epidemic models defined by ordinary differential equations. It provides a robust framework for parameter inference and statistical optimization in epidemiological models, allowing real-data analysis and disease outbreak forecasting. The code is designed to be accessible for researchers and students interested in computational epidemiology and Bayesian statistics. 🌐 URL 💻 GitHub ⬇️ Download

CEopt: Cross-Entropy Optimization Package This is a software package for non-convex optimization using the Cross-Entropy method. It includes tools for constrained optimization, leveraging an augmented Lagrangian approach. CEopt is designed to solve complex optimization problems across various fields, providing an intuitive interface and advanced functionalities for researchers and professionals. 🌐 URL 💻 GitHub ⬇️ Download

CRFlowLib — Chemically Reacting Flow Library A computational library for simulating and analyzing chemically reacting flows. It provides capabilities to solve fluid dynamics equations coupled with chemical reaction mechanisms, making it particularly useful for studying combustion phenomena and reactive flows. The library is implemented in C and uses the In Situ Adaptive Tabulation (ISAT) algorithm for thermochemical calculations, offering an efficient and robust framework for numerical experiments in computational chemistry and fluid dynamics. 🌐 URL 💻 GitHub ⬇️ Download

CROSS-OPT: Cross-Entropy Optimization Toolbox This MATLAB package employs the Cross-Entropy Method for solving constrained and unconstrained structural optimization problems. Researchers and engineers can use CROSS-OPT to explore efficient solutions in complex structural models where classical gradient-based methods fail. 🌐 URL 💻 GitHub ⬇️ Download

D-FENSE: Dynamics for Epidemic Surveillance and Evaluation This is a comprehensive database for dengue fever in Brazil, designed to support predictive modeling, visualization, and public health decision-making. The platform enables the analysis of epidemiological data, facilitating real-time assessment and forecasting of dengue outbreaks. Researchers and policymakers can use D-FENSE data and codes to study infection trends, evaluate intervention strategies, and improve disease surveillance. 🌐 URL 💻 GitHub ⬇️ Download

ELEVEN: Elevator Brake Optimization and UQ A software package dedicated to robust optimization and uncertainty quantification of an elevator brake systems. It provides a framework for analyzing braking performance under various operational conditions and uncertainties. The tool is particularly useful for engineers working on the design and safety assessment of elevator braking mechanisms. 🌐 URL 💻 GitHub ⬇️ Download

EPIDEMIC: Epidemiology Educational Code An easy-to-run educational Matlab toolkit for epidemiological analysis, which offers functionalities for modeling an epidemic, monitoring its progress and forecasting the underling numbers of interest. This code is, first of all, an educational tool for researchers and students who are interested in computational epidemiology. The programs and tutorials are designed to offer good introductory material for beginners in the field. But they can also be used to analyze epidemic data, as well as in the construction of some simplistic epidemic models. 🌐 URL 💻 GitHub 📖 Documentation ⬇️ Download

ElectroM: ElectroMechanical Dynamic Code This is a computational tool for simulating the nonlinear dynamics of electromechanical systems. It models interactions between electrical circuits and mechanical structures, making it particularly useful for mechatronic systems, piezoelectric actuators, and energy harvesting devices. The software allows users to study system responses under different excitations and optimize design parameters for improved performance. 🌐 URL 💻 GitHub ⬇️ Download

FAILURE: Framework for Assessing Inherent Limitations and Uncertainties in Reliability Engineering This is an easy-to-use software for simulating the propagation of uncertainties in a plane stress problem with material property and load variations. It helps engineers and researchers assess the reliability of structural components under uncertain conditions by leveraging probabilistic modeling techniques. 🌐 URL 💻 GitHub ⬇️ Download

FraCTune: Fractional Control Tuner via Cross-Entropy Method This is a MATLAB package designed for optimizing fractional-order controllers using advanced computational techniques, including the Cross-Entropy method. It enables users to tune the parameters of fractional-order controllers for various control applications, ensuring optimal performance in nonlinear and time-varying systems. 🌐 URL 💻 GitHub ⬇️ Download

HarvesterOpt: Harvester Optimizer This is a software package for optimizing bistable piezo-magneto-elastic energy harvesting systems. It provides a computational framework to maximize the energy harvested from ambient vibrations by optimizing system parameters. The tool is useful for researchers and engineers working on energy harvesting applications, particularly in self-powered sensor networks. 🌐 URL 💻 GitHub ⬇️ Download

MaxEnt: Maximum Entropy Code This is a MATLAB tool for computing maximum entropy probability distributions given a set of known constraints. It allows users to generate statistical samples and analyze distributions that maximize entropy while satisfying given conditions. This tool is useful in various applications, including information theory, statistical physics, and probabilistic modeling. 🌐 URL 💻 GitHub ⬇️ Download

McCloud: Monte Carlo Cloud Service Framework This is a Monte Carlo-based cloud computing framework designed to provide a scalable and flexible implementation of Monte Carlo simulations. Developed for scientific and engineering applications, it leverages Microsoft Azure for distributed computation, enabling large-scale probabilistic modeling and uncertainty quantification. 🌐 URL 💻 GitHub ⬇️ Download

ORCHARD: Orchard Sprayer Tower Dynamics A software tool for simulating the nonlinear stochastic dynamics of an orchard sprayer tower. It provides insights into the stability and operational performance of agricultural spraying systems under dynamic and uncertain conditions. The tool helps engineers design more efficient and stable spraying mechanisms. 🌐 URL 💻 GitHub ⬇️ Download

PaSR-SDE: Premixed Turbulent Combustion Simulator This is a MATLAB-based simulation tool for modeling premixed turbulent combustion in a partially stirred reactor using stochastic micro-mixing models. It allows researchers to study turbulent combustion processes, analyze flame dynamics, and improve combustion efficiency in practical engineering applications. 🌐 URL 💻 GitHub ⬇️ Download

RandBar: Random Dynamics of a Bar System A software package for simulating the nonlinear stochastic dynamics of a bar structural system with attached discrete elements. It provides insights into the dynamic behavior and stability of bar systems under uncertainty, making it useful for structural engineering and reliability analysis. 🌐 URL 💻 GitHub ⬇️ Download

STONEHENGE: Suite for Nonlinear Analysis of Energy Harvesting Systems This is a comprehensive code suite for analyzing the nonlinear dynamics of vibration-based energy harvesters. It includes implementations in MATLAB and C++, offering numerical simulations, bifurcation analysis, and optimization routines for maximizing energy output. The software is tailored for researchers working on piezoelectric and magnetoelastic energy harvesting devices, providing a robust framework for studying complex multi-stable systems and their efficiency under stochastic and deterministic excitations. 🌐 URL 💻 GitHub 📖 Documentation ⬇️ Download

SoBioS: Sobol’ Indices for Biological Systems This is a MATLAB tool for conducting Sobol’ index-based global sensitivity analysis in biological systems. It allows researchers to quantify the influence of model parameters on biological system outputs, aiding in model validation and uncertainty quantification in systems biology. 🌐 URL 💻 GitHub ⬇️ Download

SpringpotTune: Variable-Order Springpot Model Tuning via Cross-Entropy Method This is a MATLAB-based tool designed to optimize the parameters of fractional-order rheological models, specifically the springpot element, used in viscoelastic material modeling. By employing advanced optimization techniques such as the Cross-Entropy method, the software finds the best fractional-order parameters to fit experimental data. This tool is particularly relevant for biomechanics, polymer science, and mechanical engineering, where accurate modeling of viscoelastic materials is crucial. 🌐 URL 💻 GitHub ⬇️ Download

epidWaves: A code for fitting multi-wave epidemic models A software tool for fitting multi-wave epidemic models to real-world data. It allows users to analyze and predict the progression of infectious disease outbreaks by capturing successive epidemic waves. The software includes statistical and optimization techniques to calibrate model parameters effectively, making it a valuable resource for epidemiologists and public health analysts. 🌐 URL 💻 GitHub ⬇️ Download

📌 Notes

• 🛠️ All of these computational tools are open-source and available for academic and research use. They serve various applications in nonlinear dynamics, energy harvesting, epidemic modeling, uncertainty quantification, machine learning, etc.
• 📬 Feel free to contact me if you have questions or would like to contribute.